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Hi @rob-p @k3yavi
I am using salmon v1.0.0 and I am using the SAF method to quantify SE QuantSeq reads (Lexogen FWD) using these command line parameters
`salmon quant --threads 16 --noLengthC…
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Hi,
I am following the article at https://learn.arm.com/learning-paths/servers-and-cloud-computing/pytorch-llama/pytorch-llama/
but at step
```
python torchchat.py export llama3.1 --output-dso-p…
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- CPU architecture: x86_64
- GPU: NVIDIA H100
- Libraries
- TensorRT-LLM: v0.11.0
- TensorRT: 10.1.0
- Modelopt: 0.13.1
- CUDA: 12.3
- NVIDIA driver version: 535.129.03
Hello, I'm e…
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So I'm trying to run clear_quant on a RNA-seq file I obtained online (Ribo-), but I cannot seem to move past the following error:
> ###Parameters:
> Namespace(bowtie1='/home/nilu/Alignment_db/base…
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The error message:
```
$ snakemake --cores 80 --use-conda --dry-run
Building DAG of jobs...
~/miniconda3/envs/snakeflow-kallisto-sleuth/lib/python3.9/site-packages/pandas/core/indexing.py:925: Per…
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May i ask how to compare the accuracy in kernel level? I try to compare the accuracy with the fp16 version, but the allclose value seems always to be false [i raise the absulate value and relative va…
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Hi,
I recently fine-tuned the phi-3.5-moe-instruct model and phi-3.5-mini-instruct model using PEFT LORA. It seems the Moe model is performing way worse than 3.5 Mini Are there any specific things …
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Hi
We use Kallisto v0.46.0 on Linux and it works very well. But sometimes for some small size libraries it takes much much longer than expected
Those libraries are small size, mostly single-end…
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[update]: oops, I just realized you can use `kallisto quant-tcc` to do this
I know there are workarounds for this but it would be nice to have a `--transcript-counts` option for `bustools count` th…
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### System Info
```
bitsandbytes==0.43.1
sentencepiece==0.1.97
huggingface_hub==0.23.2
accelerate==0.30.1
tokenizers==0.19.1
transformers==4.41.1
trl==0.8.6
peft==0.11.1
datasets==2.14.6
…