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Hi
**CONTEXT**
I am fetching the pdb database using rcsbsearch in order to find out if a certain ligand is covalently bound in a certain pdb of interest.
**CODE**
`from rscbserach import Att…
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```
What steps will reproduce the problem?
1. Running pdb_bfactor with a pdb file that is not deposited in rcsb
2.
3.
What is the expected output? What do you see instead?
What version of the produ…
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```
What steps will reproduce the problem?
1. Running pdb_bfactor with a pdb file that is not deposited in rcsb
2.
3.
What is the expected output? What do you see instead?
What version of the produ…
-
```
What steps will reproduce the problem?
1. Running pdb_bfactor with a pdb file that is not deposited in rcsb
2.
3.
What is the expected output? What do you see instead?
What version of the produ…
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(via https://github.com/rcsb/mmtf-python)
What do you think?
hainm updated
8 years ago
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Might be nice to have a "Glycan of the month" like PDB:
[http://www.rcsb.org/pdb/home/home.do](http://www.rcsb.org/pdb/home/home.do)
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Use https://mmtf.rcsb.org ... in all URLs
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Should look something like this in the end:
```typescript
export type LigandBindingSite = {
source_object:{
rcsb_id: ..., //
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Hi everyone,
In this project, we have a bunch of experimental data on the binding of small molecules to WDR91. Many of the molecules are in nice matched pairs, in which the molecules differ by a si…
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In the showcase notebook there's a `mda.fetch_mmtf` command, but fetching from rcsb can sometimes be problematic with firewalls. Better to download and include the mmtf locally in the repo.