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Ticket to document decisions for overhaul P2GO pipeline to include InterPro2GO and other sources.
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We need a landing page for GO-CAM, that is designed for users (not curators) to access and download the *production* GO-CAM models. This would be distinct from the curator landing page at noctua.geneo…
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Hello,
I am trying to access PANTHER but the database is not responding, I restarted the R session but still having trouble accessing it. Is there some way to fix this?
Thank you!
> rba_conne…
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We need some new properties to represent mappings between equivalent (or near-equivalent) terms across species.
That is, to be able to state:
* term _A_ in species-specific ontology _X_ is equiv…
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We need to Reload the Reactome Models because they are stale.
ukemi updated
2 years ago
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I hope this is my errror and the issue can be resolved fast.
I have a markdown file test.Rmd
with just this content:
```{r}
library(flextable)
flextable(cars)
```
and I wo…
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According to @kevinxin90, the gene-pathway information is from http://consensuspathdb.org/ . However, this hasn't updated in ~2 years.
Maybe we can get the pathway data from somewhere else. For exa…
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https://mp.weixin.qq.com/s/87xT9sZEL5OrYZAsLx3dRw
ixxmu updated
2 years ago
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https://mp.weixin.qq.com/s/niqzsfDMufergpIAZ8sgXQ
ixxmu updated
2 years ago
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Hello,
I have to run multiple enrichments, over different groups of genes, so I just have a big for loop which goes over all these group of genes, and for each one just runs:
```python
enr = gp.e…