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Thank you so much for creating this package; it's been revolutionary for spicing up the standard Seurat figures! As a novice bioinformatician, I'm afraid I've run into a small issue that I hope I coul…
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### Description of the bug
```
ERROR ~ Error executing process > 'NFCORE_QUANTMS:QUANTMS:LFQ:PROTEOMICSLFQ (PXD002854-serum.sdrf_openms_design)'
Caused by:
Process `NFCORE_QUANTMS:QUANTMS:LFQ:…
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### Description of feature
In the following, PR #335 @jspaezp introduced the possibility to perform the DIA without the preanalysis step. It would be great to use the SDRF information to sub-select a…
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@jpfeuffer sometimes the pipeline fails in the id part because of the peak-peaking step by the ThermoRawFileParser. Would be great to "restart" the pipeline, same parameters but with the openms peak p…
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Hi All,In the LC-MS Analysis of Isoaspartylated Peptides part of the PXD006112 project, the experiment uses a mixture of 12 peptides to conduct the experiment, so Organization、 Organization part, etc.…
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### Description of the bug
@daichengxin we have a new version of diann 1.9.1dev:
- Docker: `docker pull ghcr.io/bigbio/diann:1.9.1dev`
- Singularity: https://ftp.pride.ebi.ac.uk/pub/databases/pri…
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Hi, Thanks for providing such a fantastic tool.
We are going to add DIANN's information to OLS @ypriverol, please confirm whether the following information is correct:
- Name of the main score at th…
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Hi everyone,
I generated an updated LFQbenchmark dataset, similar to the one from Navarro et al. (https://pubmed.ncbi.nlm.nih.gov/27701404/). I was wondering how I could best annotate the mixtures…
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### Project short name: LungOrganoidsTCR
### Primary Wrangler:
Arsenios
### Secondary Wrangler:
Wei
### Associated files
* Google Drive: [folder](https://drive.google.com/drive/folders/10Bmm…
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### Describe the question or discussion
Using the current PSI-MS CV, ETci(hc)D fragmentation can be represented in two seemingly equivalent ways.
For example, for denoting ETciD it is possible to us…