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I would like to replicate your results on the TCGA-PAAD dataset, however when downloading data from the TCGA archive, slide level labels aren't provided.
Can you provide slide level annotations rega…
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Can I combine the read count that both from TCGA and GTEx, and then perform DEG analysis directly without remove batch effect in your provided count data? Or I can only perform DEG analysis via DESeq2…
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> At present, TCGA Pan Cancer Datasets supports Cancer Biology for only four Cancer types. These four cancer type (TCGA datasets) are Breast Cancer (BRCA), Lung Cancer (LUAD), Colon Cancer (COAD) and …
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### Discussed in https://github.com/SysBioChalmers/Human-GEM/discussions/832
Originally posted by **HayaAlSiyabi** June 27, 2024
Please help, I have followed the advice given to others with th…
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Improve enrichment tabs on result view page and comparison page:
1. data table showing three digits (the plots are showing three digits while the data table is just showing two digits. It's not easy …
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Hi, I download methylation data and gene expression data from TCGA by MethylMix. After Processing,I
got the matrix of toSave$METcancer different from METcancer ,a small demo data sets from TCGA of gl…
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For the data splits of TCGA-CRC, the fold 0 has around 150 samples, while fold 1, 2, 3, 4 have only around 100 samples. Could you please check whether there are some problems with the uploaded data sp…
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I was looking for the mutation data through TCGA portal using TCGAbiolinks and I have realized that sample size are not the same.
for instance TCGA-OV case TCGA data portal shows 419 cases, however…
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Hi there,
I want to extract some mutation data and have been following the following documentation: https://github.com/BioinformaticsFMRP/TCGAbiolinks/issues/new. However, even following the TCGA-C…
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Hi,
I would like to download TCGA SARC data from GDC by TCGAbiolinks package.I wrote below code for that pupose:
```
query