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I noticed that for GRCh38 the prescored file does contain more transcripts than annotated via the script. Therefore variants are annotated differently.
i.e. `tabix spliceai_scores.raw.snv.hg38.vcf.…
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Hi,
This isn't so much an issue as it is a general question. I would like to visualize and analyze germline variants using maftools, however I am concerned that it may not be the right tool for tha…
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Dear Jianhong,
Many thanks for this great package. I have a very long gene which I only wanted to plot the exons of to enable the graph to be pulled out more. and more informative. At present it is…
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Dear author :
It is a great package to visualize peaks on high-througtht sequencing data. I can't see any tracks when i upload my bigwig file into trackviewer .My bigwig file is from deeptools…
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For regions of significant detail if might be useful to split tracks across multiple rows, effectively stacking plot. This can be done manually by limiting the ranges in `lolliplot` export to PDF and …
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Hi,
I am sorry to disturb you with this question. I am quite a beginner when it comes to coding in R. I am currently plotting a lot of different genes with lolliplot (great package btw). However, I…
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https://github.com/jianhong/trackViewer/blob/28dc491047ace8ddcbe52994d3e4d71ff6fbd48c/R/plotLollipops.R#L202
allpha instead of alpha
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@lawremi @sanchit-saini Commit 85fc802ee74cd94c5a3bc5d3725b00f59cb4a6f7 breaks 42 software packages with a "shape of 'skeleton' is not compatible with 'NROW(flesh)'" error on all platforms today: http…
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Dear trackViewer team,
Great package!
Is it possible to change the color of the y-axis and the y-axis labels? I would like to match it to the color of the coverage track.
Many thanks,
Oliver
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I have been trying to use lolliplot to display mutations. My gene of interest contains a lot of exons and has large intronic regions. As a result, I want to shrink the intronic regions, but I am havin…