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Hi,
Thanks for the awesome program!
I was able to run demo_life using my tractography results (mrtrix), but a trackvis trk file converted from a fg matlab structure using fe2trk is not recogniza…
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Automated Fiber Tracking Methods using Atlas, or are there any other methods to create fiber tracks.
Is the fiber tracks for each dataset stored somewhere or the fiber tracking is done and validated…
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Not sure if this is a design choice, but the app interface (https://brainlife.io/app/5ea7dbebf1745d70baf80678) doesn't currently have a parameter input for this. seed_density parameter input theoret…
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### Description
`tract_querier` apparently expects tractograms to be devoid of "invalid" streamlines, such as those from an unfiltered tractogram that consist of a single point.
I could filter my …
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Hi,
I am trying to understand how to use the scoring system, and to keep things simple I am trying to run the system to evaluate the ground-truth .trk files.
The steps I follow are:
1. export t…
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@alee156 & @jonl1096 :
- Before Thursday: Finish Batch implementation and send to Greg for approval
- Thursday: Implement changes Greg suggests after we send the above to Greg
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Having the option to use an arbitrary user-defined colourmap for displaying streamlines (with the -tractography.tsf_load flag) would be great, as discussed [here](http://community.mrtrix.org/t/custom-…
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Hello, I have a single shell (one b0 and 31 b1 volumes) data with low b-value (b1=1000), 31 directions. Non-isotropic resolution: 2.0 x 2.0 x 2. 4 mm . I applied common pre-processing steps (https://3…
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Hi,
I am new in xtk. It looks very excited for me to visualize vtk file via browser.
However it seems that those vtk files need to be pre-computed for visualization, cannot be computed just-in-time…
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Running CMP from commandline, the value for is not recognized from the .ini file. Instead it appears to be hardocded depending on whether you run probabilistic or deterministic tractography.
If I com…