-
Hey Antonio
I'm starting a thread here like you suggested.
I wanted to use TCGAbiolink to study differential expression of miRNA across different cancer type. What I observe in the vignette is th…
-
### Please link to the GitHub Discussion for this proposed analysis.
https://github.com/AlexsLemonade/OpenScPCA-analysis/discussions/628
### Describe the goals of this analysis module.
The go…
-
Hi,
First at all, thank you for this wonderful tool. I have some questions about the files generated by quant function of arcasHLA.
I'm wondering what does significate the results in the quant.l…
-
I've been reviewing the survival code in the vignette and would like to download `*_rnaseqv2` and `dataDEGsFiltLevel` datasets for another project. Have you considered adding the code you used to ge…
-
Original Publication: https://gdc.cancer.gov/node/977
"The expression data for mRNA and miRNA were batch-corrected to adjust for platform differences between the GAII and HiSeq Illumina sequencers. "…
jjgao updated
2 years ago
-
#### Scientific goals
- Create correlation matrices for polyA samples and ribodeplete (stranded) samples using gene expression data.
- Generate gene outlier thresholds for ribodeplete samples.…
-
Hello everyone, I am trying to use GDC prepare to obtain the expression levels for miRNAs in this project, but I am having troubles with GDCprepare. When I prepare the query I obtain this first warnin…
-
Hi there,
I am downloading gene expression data of TCGA-GBM project with multiple data platforms. My query is:
expre
-
-
Hi,
I wanted to run below query via GDCquey:
`query