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Hi,
From the KU rules, It looks like the aMeta is loading KU DB individually for each samples.
However, KU has an option for loading first the DB in the working node and then use this loaded DB …
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# Quality Control
I generate raw-samples.txt which has the sample_name, R1 and R2 as columns.
```
# Get R1 and R2
ls 00-RAW/ | tr " " "\n" | paste - - > doc/tmp.r1_r2.txt
# Get sample names
…
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hej,
I am trying to run the demo data but it throws me an error in the last steps:
[71/07e145] process > CheckGenome (CheckGenome) …
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Mermaid has an update that breaks some of its older valid markdown:
Fix it…
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From meeting notes of 2024-10-18:
```
- Issue [#66](https://github.com/UPPMAX/R-python-julia-matlab-HPC/issues/66) Python Schedule
- Add 10 mins for parallel
- RB: volunteers to remove a…
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Description:
The contact person for Uppmax has changed.
- Find new uppmax contact person
- Send email with feedback from helpdesk
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### Welcome
The first page, 'Get Started here' has a lot of text that is present elsewhere.
I feel a first page should be short. In this case, it should mostly redirect on pages to log in to a sp…
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There is a link to https://github.com/UPPMAX/R-python-julia-matlab-HPC/tree/main/exercises/matlab/MatlabExercises.tar.gz . It is good that this link is there. However, the file is not there yet.
To…
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## Summary
| Status | Count |
|---------------|-------|
| 🔍 Total | 247 |
| ✅ Successful | 197 |
| ⏳ Timeouts | 0 |
| 🔀 Redirected | 0 |
| 👻 Excluded | 49 |
| ❓ Unknown…
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.sam files should not be present for more than X months on the filesystem. Automatic conversion to .bam can be performed.
Likewise, unused .fastq files (for a reasonable amount of time), should be co…