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Hello, could you please clarify which allele is used as reference allele for LD calculation with apex store function? Could it be same allele defined in VCF file as genotype input?
Thanks in advance…
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There are two limitations inconsistencies that I believe would be important to resolve:
1) --output-vcf-path does not allow to output to stdout. I got the following error:
```
GTC converter - ERROR…
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I am looking to have both SNV called and non SNV's in the same vcf for downstream analyses.
My temporary workaround at the moment is to run the tool twice, once with the reference to generate the …
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- [ ] Make a Chapter6.md file
- [ ] Create a summary in the .md file
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The filter logic in `merge` is really nice
```
-F, --filter-logic x|+ Remove filters if some input is PASS ("x"), or apply all filters ("+") [+]
```
but I want to suggest another op…
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The font used in the `-base` image
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Hi! I'm quite new to bioinformatics and I'm running into an issue using krisp_vcf where I get the following error:
(py311) Janehol@bcsumx01:~/krisp$ krisp_vcf krisp_metadata.csv Race_1.masked.fa --…
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The bc ones are working but the others aren't
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Right now it looks like it serves up the home page with no styles which sucks