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When using pmcmc for estimation, I note that the package outputs parameter estimates which can be extracted using the coef function. Does the software calculate these estimates using all pmcmc samples…
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Hi,
I've just discovered your nice R package because I was searching for a Bayesian estimation applicable for data for which you would normally use a paired t.test.
My data consists of acceptabili…
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Do em. Potentially highest density credible intervals too.
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Hi
if I run something like:
fit = brm(count ~ log_Age_c + log_Base4_c \* Trt_c + (1 | patient) + (1 | visit) + (1 | obs),
data=epilepsy, family="poisson")
the summary function only shows th…
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It is possible to obtain credible intervals for contrasts ?
I think many times you set up a contrast as the quantity of your interest in a particular model, then it would be nice having CI for that …
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When attempting to read a factory reset device the JSON decoding fails.
Reading the configuration from a unit programmed with the device configuration tool works fine.
![image](https://cloud.g…
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It is easy to get calibrated ranges from BchronCalibrate. But is there some way to extract both the mean and 1 or 2 SD for calibrated dates? It looks like the sum(agegrid \* densities) = mean. But wha…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/george-weingart/banocc
Confirm the following by editin…
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Running the command:
`delimit --bayes_multi 5000 --tree_file rooted.inferred_unique_taxa.1.txt --output_file example --seed 777 --bayes_sample 50 --bayes_startrandom --bayes_log`
I get the following…
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Try strict density dependence model without density independent overdispersion (`rho[i,t]`) to see if mixing improves (mcmc autocorrelation is reduced). Also consider whether that makes sense. Alt. co…