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From Julie:
I found this on live and beta flymines.
Here's what I did:
1. run query:
``` xml
```
1. Filtering on first column does not work at all.
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The template "Gene [D. melanogaster] --> CRMs + TF binding sites overlapping these CRMs." fails with an internal server error message after a 10min timeout. The request being made is:
```
curl "http:…
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Katerina ran the following command, and the qsub'ed jobs failed:
```
perl ~/Tools/RUM-1.11/bin/RUM_runner.pl ~/Tools/RUM-1.11/conf/rum.config_hg19 fwd.fq,,,rev.fq rum2/ 5 kat_test -qsub
```
She then…
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Run this query in flymine:
``` xml
```
And you'll see the mouse result is `3815` - the entrez gene ID. Instead this should be the MGI identifier.
The FlyMine database was last created 10 Ma…
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This template fails:
http://beta.flymine.org/beta/template.do?name=GO_GeneOrthologues
With this error:
> Error: Gene.secondaryIdentifier,Gene.secondaryIdentifier already in the select list
> Unable…
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From template:
Pathway --> genes
Making a list of genes gives error:
XML is well formatted but query contains errors: Path Pathway.organism.name in view list is not in the model.
Console:
Error: Pe…
mlyne updated
11 years ago
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Found in FlyMine 36.1
Associated with: results tables
Reproduce:
Column summary on 'mRNA Signal'
Delete second range value and add new from keyboard eg. 1500
Error:
Ooops...! XML is well formatted bu…
mlyne updated
11 years ago
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In both FF & Chrome
For template:
Gene [D. melanogaster] --> FlyAtlas data.
No column summary for column:
Micro Array Results >> Present Call
Gives: Fly Atlas Result Present Calls
but no further t…
mlyne updated
11 years ago
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Found in templates which return numerical data columns containing zeros eg.
Gene [D. melanogaster] FlyAtlas data.
Occurs when a column has a numerical range from zero to n. If a filter is applied…
mlyne updated
11 years ago
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Both FF & Chrome:
After filtering with column summary the column header filter icon no longer highlights to indicate an active filter for that column.
Template tested:
Gene [D. melanogaster] --> FlyA…
mlyne updated
11 years ago