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Hi, I'm new using RNetLogo. I was trying to apply a procedure from
> Facilitating Parameter Estimation and Sensitivity Analysis of Agent-Based Models: A Cookbook Using NetLogo and R, Thiele 2014
…
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iBioSim Version 3.0.0
Operating system: Mac OS X
Bug reported by: mfuegger@lsv.fr
Description:
I0 is initially 0, and only set to 100 with delay. The stochastic simulations show I0 = 90 from time 0…
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Are there any heuristics/tips for setting the relative noise magnitude for the upper bounding part of global function search if the variance of the function is known to high-precision?
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As another use case, the following workflow has been discussed:
- From a GINsim model, perform a qualitative simulation,
- Export in MaBoSS format,
- Perform a stochastic simulation using MaBoSS.
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@baharev
I want to use sdopt-tearing in my Master's project but I am having some difficulty interacting with your code. Currently, I manually create the incidence matrix and pass it to the methods i…
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#13163 will be bringing in the long-awaited replacement of numpy's PRNG infrastructure. In the interest of keeping that PR manageable, we will merge it to master before all of the decisions are finali…
rkern updated
5 years ago
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Just updated to OpenMM 7.3 for ChimeraX/ISOLDE, and my built-in demo/test model now runs agonizingly slow on minimization - about 5 minutes where it used to take 1-2 seconds. Each 1,000-round minimiza…
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Per Reviewers:
"p4: At "correlation time", maybe add a footnote for the MC case (as there is no "time" there); later, a footnote 11 says this, but it is a bit late"
"p11/footnotes 14,15: Very of…
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This discussion bring some insights about adding a multivariate imputer in scikit-learn. Because of release time constraint, the development was moved into a specific branch (FIXME: give a specific na…
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[[Minimal Exploration in Structured Stochastic Bandits, Combes et al, arXiv:1711.00400 [stat.ML]]](https://arxiv.org/abs/1711.00400) presents the OSSB algorithm
- [x] Implement OSSB for classical s…