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Hello,
I did SNP calling with GATK (HaplotypeCaller, CombineGVCFs and GenotypeGVCFs) and as a result I have a final with all snps after applying several filters.
Now I would like to convert my v…
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Basically, `pysam.tabix_index` always tries to make a CSI index for VCF files, no matter what you do. This is different behaviour from `tabix`, and also probably a bug.
```bash
$ pip freeze | grep…
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When someone follows a link either to the community or bettercourses.org, make sure they get sent back to the original page they wanted once they've authenticated.
I think this is happening on bette…
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Hi,
I have to install pysam from the repository on my user directory because I have no access to the root. I used the command
python2.7 setup.py install --user --prefix=
but I got the following…
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When generating some rows for tests I discovered that the `GT` field seems to be unset on the creation of a second identical record. Please see the below minimal example. (`pysam v.0.21.0`)
```py
…
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Also fix blog categories - some are all "Manual"
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Hej!
I have found a potential bug in the develomental version. I get an error message when trying to merge several vcf files with bcftools merge. I have tried the the latest source code commit b7b2a3…
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#### Describe the bug
Could you provide background information as to how the SFS Reader was developed? The SFS Format is a commercial product from AidAim software? Did AidAim license the format to Hy…