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Dear Catalyst Maintainers,
Before I tell you about my issue, let me describe my environment:
# Environment
* Operating System: (Windows 10 or `$ uname --all`)
* Python Version: `$ 3.7`
* Py…
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Bioconda project uses the pre-built binary for Linux x86_64 - https://github.com/bioconda/bioconda-recipes/blob/a6cc66db90f8e7e29a402a8d137a208b50b17176/recipes/vg/meta.yaml#L9
There is an active wor…
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https://mp.weixin.qq.com/s/J5ZqvGQittN1vQtYIsuV1Q
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Hi,
Thank you for developing such a useful tool. I am testing cellbender v0.3.0 on a 10x scRNA-seq sample, and the default settings were used.
The logs and the html look normal, with no errors o…
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I was trying to reorder the clusters in a dotplot reordering the levels. However, it only reordered the labels in the y-axis but not the data shown.
I think a similar issue happened in Seurat v3.…
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Hi,
Another issue in DotPlot().
I'm using DotPlot() a lot and I found that the color encoding does not always match what I see on the FeaturePlot(). Specifically, when two clusters have very si…
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https://mp.weixin.qq.com/s/qFfCDp5nDV0JHdUbAkltFw
ixxmu updated
9 months ago
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Hi,
Thanks for all the hard work you are doing by removing dependency to unmaintained phantomjs
I added more cpu and ram to my kubernetes pod and it seems more stable.
Any ideas?
Thanks
…
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Hi,
I generated the pangenome table with the function query_pangenes. I am using the version v1.2.3.
The header of the table is:
pgID interpChr interpOrd og repGene genome …
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I am interested in comparing gene expression of 2 genes (CACNA1D and CACNA1S) in my sc data. By looking at the dotplot, it seems that CACNA1D is highly expressed in a larger pct of cells (eg cluster 4…