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**Is your feature request related to a problem? Please describe.**
This is another suggestion from Jessica Chong at UW that would also be useful to our team. For genome analysis, we don't know how to…
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Hey there, firstly let me just say its super nice to have this available to process DIA-NN outputs further. I am getting an error running the protein groups calculations.
The error says "error in […
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Although I use 3-way in-silico translation, a lot of time, proteins prefer to use one ORF, so we want to annotate each obtained T antigen to prioritize certain neoantigens for experimental validation.
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### Week 1 - Get to know the community
- [X] Join the communication channels
- [X] Open a GitHub issue (this one!)
- [X] Install the Ersilia Model Hub and test the simplest model
- [x] Write a motiva…
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Dear Selene Developers,
Thanks for creating Selene. I'm finding it super helpful for getting into CNNs. I have trained a model with 36 features using Selene, and this model is saved in training_out…
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I have the same issue! I'm trying to reanalyze some data from [this paper](https://www.nature.com/articles/s41587-021-00910-x) by following [this protocol](https://www.nature.com/articles/s41596-018-0…
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Hi, I am testing the library-free search using DiaNN. I ran DiaNN in Windows and Linux with the same input file, fasta file and parameter setting. I found that there were some differences in terms of …
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### Week 1 - Get to know the community
- [X] Join the communication channels
- [X] Open a GitHub issue (this one!)
- [X] Install the Ersilia Model Hub and test the simplest model
- [x] Write a motiva…
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Selvaggio, Gianluca, Claudine Chaouiya, and Florence Janody. "In silico logical modelling to uncover cooperative interactions in cancer." International journal of molecular sciences 22.9 (2021): 4897.…
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Hi,
I want to make SpliceAI scores pre-calculated files with in silico mutagenesis like yours for updated reference genomes and annotations. Could you share your scripts when you used for running Spl…