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I'm planning to use DADA2 to denoise sequencing data of a very short barcode sequence (20bp). Aside from changing the minLen parameter is there anything else I should do?
Thank you for your attenti…
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Hi Ben,
I am working with DADA2 for Illumina Hiseq 2x250 sequence analysis. There seems to be some problem in merging reads operation. As shown in below, most reads are lost.
> input filtered…
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Hi there,
I am using dada2 to deal with reads had bad quality (especially on the reverse reads) as following:
![image](https://user-images.githubusercontent.com/42954326/45008662-7ad06380-b036-…
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For example, we have a new denoising algorithm `imgdenoise_new(img)` and want to compare the performance. A subtraction is often used to get the difference.
```julia
img_new = imgdenoise_new(img)
…
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I changed the calculation of the green channel in xtrans fast implementation.
The current version calculates the average of the sorrounding 5 greens when at a red or blue location while using the ori…
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This is a command to take a 6 second long exposure for
quite some time t.
This way I made a series of photo of cassiopeia in the night sky:
raspistill -q 100 -t 36000000 -ss 6000000 -sh 0 -co 50 -…
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Hello,
I am doing some tests with your example:
https://keras.rstudio.com/articles/examples/lstm_seq2seq.html
Instead of LSTM layers in the enocder/decoder I would like to have bidirectiona…
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Hi ,
In this repository ,
https://github.com/WolframRhodium/Super-Resolution-Zoo/blob/master/RED30/super_resolution/RED30_4x-symbol.json
has stride in all convolution / deconvolution layers…
ved27 updated
6 years ago
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I'm running dada2 on a node with 20 cores. I pooled 5 samples together to get 750k reads and ran:
`denoised
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What difference do you make between `pitchgram` and `spectrogram`? Isn't it a plot of magnitude of STFT in both cases?
Same question for reassigned pitchgram vs. reassigned spectrogram, what is the d…