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I got a bit confused trying to use the GO:0052858 and GO:0090595 terms. As far as I can tell, there are two issues: whether one substrate is lysine vs. peptidyl-lysine, and whether the other substrat…
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Hullo!
The way that things are shaping up, `drizzle` will continue to treat `page` frontmatter similarly to `fabricator`—e.g. you can override the default `template` by using a frontmatter property. …
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AI-2 is an important quorum sensing signal in many bacteria. Once inside the cell, it gets phosphorylated by AI-2 kinase, and this has recently been shown for E. coli as well (PMID 20025244). For Sa…
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Child of Intracellular
>>GO New: IPAF Inflammasome complex
>>GO: New NALP1 Inflammasome complex
>>GO:New NALP3 inflammasome complex
>>GO New: IPAF Inflammasome complex
Possibl…
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Hi again. Is it possible to use ncbi_searcher to only search for refseqs? If not, would it be possible to add this functionality (perhaps an if/else statement around lines 130-134 that would add in …
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We have some initial idea of what presets we want for lmono, Salmonella, etc. I'll put in a `--quick-settings` flag.
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A couple of people have said over the past month or so that a domain specific example that involves handling next-generation sequencing data would be a very useful thing to have - so it seemed like a …
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Showing "0 publications found" for all organisms tested. Example: Salmonella
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Mapping to the wrong number of pathways in the beta site. On production, the number of pathways for Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 is 133. On beta, the number of…
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I ran into a segmentation violation while a short way into the HyperGiant tutorial you wrote:
``` scheme
(import chicken scheme)
(use hypergiant)
(define keys (make-bindings
`((quit ,+…