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Hello,
I already know that standard beta value won't work with my data, so I intend to require `diagnostic_report(cem)` to manually set it. However, I'm facing a problem with the graphs making:
`c…
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Hi,
I'm trying to find a way to look check modules of co-expressed genes. I'm aware that there is the `AddModuleScore` function in Seurat but is there a way to identify gene modules de novo before …
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/Rvirgenslane/GmicR
Confirm the following by editi…
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I am running R v.3.4.3. The error is about the "WGCNA" package not being available for microbiomeSeq.
"ERROR: dependency ‘WGCNA’ is not available for package ‘microbiomeSeq’
* removing ‘/Library/F…
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Hi,
Thanks for referring to the Drosophila eye development paper. I read through it. Excellent work!
For the co-expression network construction, the paper used PTM, and GENIE3. The current version …
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Issue: Latest cffi on conda-forge is now 1.13.0 and if you upgrade to this then rpy2 3.1.0 will not work anymore. You get the following error when you try to import anything from rpy2:
```
Traceb…
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Hello,
I wanted to try microbiomeSeq, but I ended up with the following `namesapceExport` error during installation:
>Error: package or namespace load failed for ‘microbiomeSeq’ in namespaceExport…
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Hi,
I'm new to using R for data analysis and just managed to perform DESeq2 on my RNA-sequencing data. I would like to use cemitool, but I keep on getting the same error:
`Error in dev.off()…
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Hi,
I installed the package from the Bioconductor and tried the example script.
However, the following script failed.
gmt_fname
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1) How to use results from GEMmaker in popular DEG analysis software. We don't need to describe the whole process, just how to prepare the data for use by the software.
2) How to use the results …