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It appears that the current algorithm for `fqtools type` can get the fastq quality format wrong. Here's a reproducible example:
```
fastq-dump --split-files ERR719681
# Read 300355 spots for ERR7…
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After working on setting up the proper environment for diffdock, I thought I had a system that would allow me to roll with pytorch 2 and cuda 12. I went to run a pdb/ligand pair out of the example fol…
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```
Based on Bio::Tools::SeqStats::get_mol_wt()
No generic interface/role for a set of sequences? If there is, Complex should
implement it.
```
Original issue reported on code.google.com by `chad…
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### Setup
I am reporting a problem with Biopython version, Python version, and operating system as follows:
Biopython: 1.78
python: 3.8.3 (default, May 19 2020, 18:47:26)
OS: CPython/Linux-5.4.7…
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When using sff_extract (seq_crumbs 0.1.8) on SFF files that contain amplicon reads, I get the warning:
---
WARNING: weird sequences in file /srv/whitlam/bio/data/pyrotags/raw/Gasket67/Gasket67.sff…
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---
Author Name: **Daisie Huang** (@daisieh)
Original Redmine Issue: 3367, https://redmine.open-bio.org/issues/3367
Original Date: 2012-06-20
Original Assignee: Bioperl Guts
---
The yn00 parser doe…
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I see the first instance of an actor in `pony-bio` as being an implementation of multiple sequence alignment (MSA) after #13 is addressed
Such an actor would be initialized with the MSA parameters …
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Hello!
I am trying to use vcmsa on a group of 7 proteins but I get the following error:
```
Traceback (most recent call last):
File "/home/metazomics/miniconda3/envs/vcmsa_env/lib/python3.9/…
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I encountered the following error when I test example data. Is there any solution to this error? Thanks.
[PEM-Q] primerChrom: chr15
[PEM-Q] primer_start: 61986633
[PEM-Q] primer_end: 61986652
[P…
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We don't have an easy way of serializing/deserializing a collection of sequences. This does not work:
http://mailman.open-bio.org/pipermail/biojava-l/2015-February/011357.html
Alternative workaround…