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Hi all,
When I want to convert a CWL JSON file into an app, my 'required' field is not taken into account:
The following is one of my input definition:
```
{
"sbg:category": "Basic"…
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## Description
Entering free text is generally inconvenient and error prone for users. For the "Workflow type" and "Workflow type version" fields in particular, at any time, only a subset of values i…
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I was wondering how to change the default `read-only=true` option to `false`. I am trying to write files inside the container without an expected exact output to be defined in the workflow.
I think…
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@mvdbeek proposed using a schema-salad representation of workflow/tool inputs to help build the web UI for executing CWL tools/workflows in Galaxy
I wrote https://github.com/common-workflow-languag…
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The tools directly orchestrated by the workflow, and their dependencies.
- **SW1 Identification**: PID, name, version, release date, and description of the software. Preferred citation. _When the s…
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The [schema of CWL](https://github.com/common-workflow-language/cwl-v1.2/blob/c0c31c54412619d106e100bfe70a49831a673004/Process.yml#L901) uses the following `jsonldPredicate` but there are no descript…
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We are probably reaching the limits of bash and the library will get harder and harder to maintain as it grows. Should we consider re-writing in python, perl, wdl, something else? To resolve this issu…
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```
$ cwltool --pack cmsearch-multimodel-wf.cwl > cmsearch-multimodel-wf-packed.cwl
```
When importing the packed workflow in Galaxy, error below occurs
```
Traceback (most recent call last):…
ghost updated
5 years ago
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hi!
When I define an input folder as writable it is still being symlinked. Example:
```
cwlVersion: v1.0
class: CommandLineTool
requirements:
- class: DockerRequirement
dockerFile: …
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inspired by https://www.biostars.org/p/260090/