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Dear einprot developers,
Currently einprot supports the following species
```
> getSupportedSpecies()
taxId species speciesCommon
1 10090 …
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When I try to convert all templates to cypher, some templates are not converted. For example consider the template Gene_transcriptionFactors.
```
```
It gives following exception,
```
…
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### Describe the bug
When running harpy align on a sample named C3-flyS3-10477404-22NLWYLT3-L2_trimmed_R1.fastq.gz I get an error saying Logfile Align/bwa/logs/C3-flyS3-10477404-22NLWYLT3-L2_trimmed.…
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Hi IQ-TREE team,
Thank you for the great software! I'm having some trouble with the error below, when I try to run IQTREE (multicore version 2.1.4-beta COVID edition) with the -g option to constrai…
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Hello,
I am trying to do initiliazing step of scenic. I tried to used fly datase.
Here is my code and the error that i received.
I tried to instal arrow package, but did not work.
Any help to sol…
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Provide trainings with details about the algorithms of the main analysis to help user really understand what is happening .
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I'm using the progressive Cactus alignment tool to measure indels between different Drosophila species. When converting the hal file to a maf file, I run a command similar to this:
source ./environme…
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https://bioentity.link//#/publication/10.1093/genetics/iyae151
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I'm having issues downloading and reading the drosophila feather file. I have no idea what the error message means and when I look it up, I don't get any answers online.
My code and the error messa…
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Add ENCODE blacklists for assemblies where available:
https://sites.google.com/site/anshulkundaje/projects/blacklists
These were originally generated relative to UCSC genome builds. The files can …