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- Keightly 2005:
- http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1240079/
- intro explains some of the problems associated with identifying conserved noncoding elements (CNEs)
- Siepel 2005:
- htt…
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Hi Kai!
I am getting the following error when I run just the first perl script on my own sequences:
[eedsinger@cluster5 orthored-flatworm-seasquirt-octopus-human-fly-worm]$ bash 01-orthored-6-sp…
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Hi IQ-TREE team,
Thank you for the great software! I'm having some trouble with the error below, when I try to run IQTREE (multicore version 2.1.4-beta COVID edition) with the -g option to constrai…
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Add ENCODE blacklists for assemblies where available:
https://sites.google.com/site/anshulkundaje/projects/blacklists
These were originally generated relative to UCSC genome builds. The files can …
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Very cool repo!
Wasn't sure if the issue list is appropriate, but [Here](https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5806122/) is a paper that you might find interesting. Involves the construction …
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May I suggest the following genomes which often are used as outgroups or as supplemental information in various biological analyses:
Genomes are available either at GenomeArk or ensembl.org
Mode…
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Dear einprot developers,
Currently einprot supports the following species
```
> getSupportedSpecies()
taxId species speciesCommon
1 10090 …
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Provide trainings with details about the algorithms of the main analysis to help user really understand what is happening .
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Would anyone find it useful for BridgeDb to support the [NCBI Taxonomy](https://www.ncbi.nlm.nih.gov/taxonomy) for identifying organisms? Some time ago, I mapped each of our supported organisms to its…
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Hello,
I used isoquant3.6.1 with the command `isoquant.py --reference /path/to/Drosophila_melanogaster.BDGP6.32.dna.toplevel.fa --bam primaryalign.sort.bam -o txquantify --model_construction_str…