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Here we will keep track of compatibility with Enzyme for taking gradients.
First think is to collect a few examples to run.
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**Is your feature request related to a problem? Please describe.**
We only use this in legacy_react code.
Depends on #900
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#### Current behavior:
25 genes are discovered to be uncorrelated with their corresponding reactions in `Starch and sucrose metabolism`
| Gene| UniProtID | Reaction| GPR | Correlation| Man…
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cc: @michel2323 & @amontoison
With @lcandiot I was wondering how to write a proper JVP J'VP with Enzyme and finally converged.
This might turn into a nice example one of these days.
@wsmoses any i…
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there are three ways of encoding a partial [enzyme code (EC)](https://bioregistry.io/ec) as an identifier, ie. a non-leaf node:
1. `EC:1.-.-.-` (e.g., as used in GO)
2. `EC:1` (e.g., as used in In…
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* **PTHR ID & PTN node:**
ALANYL-TRNA SYNTHETASE (PTHR11777)
PTN000206953
* **Sequences with problematic annotation (ID + gene/protein name):**
FBgn0027094 AlaRS
* **Type of Issue: Erroneous sou…
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MWE:
```julia
module MWE
using Enzyme: Enzyme
using Distributions: Distributions
Enzyme.API.runtimeActivity!(true)
function f(x)
d = Distributions.MvNormal([1.0, 1.0])
v = eachcol(x)
re…
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Ron Caspi (ron.caspi@sri.com) has done an analysis and finds 2188 EC terms are missing from the EC2GO mapping file. This number includes some classes and subclasses, e.g. EC-5.99. There are 2111 com…
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I'm looking at the enzyme ABO (https://api.glygen.org/protein/detail/P16442-1). In UniProt and GlycoEnzDB, it says that ABO catalyses very specific reactions, adding a GalNac or Gal to a Gal-Fuc:
…
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After install,I test your code `data('AD_data')
ad.count