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### Setup
I am reporting a problem with GSEApy version, Python version, and operating
system as follows:
3.10.12 | packaged by conda-forge | (main, Jun 23 2023, 22:40:32) [GCC 12.3.0]
CPython
L…
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# Story
Currently, the confidence intervals (CI) in GrowthBook do not reflect the impact of correcting for multiple hypothesis corrections. They sometimes contradict the interpretation of the correc…
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https://mp.weixin.qq.com/s/nxkTXyKiK1h7ujTDipTLsQ
ixxmu updated
4 months ago
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Dear Frederick,
Thank you for developing ANCOMBC. I'm a fairly new user and still learning it.
Recently, I have been trying to apply ANCOMBC2 to a dataset but have had a few issues. The most recent …
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Hi!
It appears that you have updated something within your package and my results are drastically different from before.. Different bordering strange! If I had a variable being significant in 15/15…
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I am running ancombc2 on some of my data and am very interested in the idea of the pseudo-count sensitivity testing. When I run my data with the pseudo_sense option set to be true, in my output I did …
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I'm wondering how GSEApy computes FDR q-val and FWER p-val for the gsea module. I have found that FDR q-values do not preserve the ordering of p-values. Also, the FDR q-values are larger than the FWER…
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Hi Frederick,
I have another question regarding the choice for the random formula of the ANCOMBC2 model, I wanted to include both a random slope and a random intercept, as suggested in your [vigne…
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I have run ANCOMBC2 in the past, an now I tried to run it again. The process starts and the this error appears
Estimating sample-specific biases ...
Sensitivity analysis for pseudo-count addition …
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Hello.
Thanks a lot for all your efforts.
Whenever I try to build an enrichment map, I get a strange error:
![image](https://github.com/BaderLab/EnrichmentMapApp/assets/57086613/0fd13b73-860f…