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So if I communicate with the LogDNA API through postman, posting a log line returns this:
```
{
"status": "ok",
"batchID": "611c8c7b-161c-43b8-88c3-3d90500070af:65281:ld86"
}
```
But if…
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when running DAG sub-command on iCLIP v2.0, getting two errors
1. related to graphviz not be loaded
2. related to print message within pipeline
Command run:
```
snakemake -s "../config/Snakefil…
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Getting the following error with align
```
BUG: iA>=P.seedPerWindowNmax in stitchPieces, exiting
```
Command used:
```
STAR --runMode alignReads --genomeDir /data/CCBR_Pipeliner/iCLIP/index/a…
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Assessment:
For each read, an alignment was assessed for any gaps, with two possible scenarios:
alignment—gap—alignment
alignment—gap–insertion/deletion—alignment
For all reads that match ou…
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Hi,
When I place a comment before a function declaration in iCLIPS, I get the message:
> [EXPRNPSR3] Missing function declaration for '[put the name of your function here]'.
Attached is a scr…
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The `\movevc` tag, when used for `\clip` tag, moves the clip throughout the text/shape. Also, when it is used for `\iclip` tag in y direction it moves the whole text/shape alongside the clip; however,…
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Determine difference in v1 and v2 of the pipeline using PURECLIP peak calling tool.
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https://github.com/RBL-NCI/iCLIP/blob/bd28db9f09064b40ac76d1447694a130a1d35f8b/workflow/Snakefile#L1225
I think this
```
samtools view -h {output.merged} \\
| samtools stats…
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Marco asked me to review the DE results from this run and I have found a few issues.
# Summary
Completed contrasts:
- WT_fCLIP_vs_KO_fCLIP
- WT_fCLIP_vs_WT-NOPFA
Problematic contrasts:
- …
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Hi,
I have noticed that tab autocompletion in iCLIPS works when the CLIPS kernel starts, but as soon as I run a cell that generates some sort of output, the tab autocompletion no longer works.
…