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hello,
I process my .imzml file with Cardinal 3.0.1:
**d_peaks %
normalize(method="rms") %>% #tic or rms
smoothSignal() %>%
reduceBaseline() %>%
peakBin(ref=mz(mydata_ref), #mydata…
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Hello!
I recently had to deal with the imzml format, and since I couldn't easily open imzml files, users have been giving me uncalibrated png images with an extra frame and where pixels are not map…
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### Basic information
I want to analyze data from UPLC-Q-exactive-Orbitrap and by imaging MS data with mzmine3.
Imaging MS data was collected from MALDI 7T FT-ICR mass spectrometer SolariX XR e…
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Hi, i've noticed something about the .GetMetaData() function. It only returns the "name" parameter, and not the "value" parameter. I'm assuming that the metadata values get lost somewhere in the trans…
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Hi!
We encountered that Lithops under the hood uses `put_object` from botocore which has a file size limit (5 GB). Maybe it makes sense to use `upload_file` or `upload_fileobj` to increase the limi…
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Trying to have local installation with "conda env create -f environment.yml" , have the following error, which says qt 5.12.5 is incompatible:
: …
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Hi, i'm trying to open a centroided processed imzML file in pyM2aia, but there seems to be an issue with the parsing of the spectrum property.
When i load my file, i get the following error message…
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We assume that the counting of the spectrum index coordinates (x,y,z) usually starts with 1 - which to my knowledge is not explicitly defined. If an imzML writer unintentionally sets the z coordinate …