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- [ ] 1. Salmon/sleuth (Prereq: familiarity with HPC, bash and R)
- [x] 2. SRA/GEO data download (Prereq: familiarity with HPC and bash)
- [ ] 3. Sequence data QC (fastqc, multiqc, qualimap) (Prereq…
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**Goal:**
Design representative testing/tutorial/training data to be published as Shared Data Libraries.
**Objectives:**
- **Migrate intact Data Libraries from one Galaxy to another** https://gith…
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```
5mC and 5hmC are common DNA methylations. Single-base methylation seq data are
quite different from histone modification ChIP-seq data in the way of how the
methylation information is encoded in…
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**Is your feature request related to a problem? Please describe.**
We need to create a minimal germline variant calling pipeline use case setup here
- https://github.com/bihealth/snappy-use-case-g…
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Suggested topics/titles:
"How to publish your mRNAseq transcriptome and differential expression analysis"
"mRNAseq: quality control and evaluation"
"mRNAseq: next steps"
"So you've got some numbers..…
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## Bug Report
#### Current Behavior
When I install a software, scoop will create a RunAsAdmin folder in the current working directory to save the cache. Why?
The command I executed when ins…
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Hi,
I am using bowtie 2.3.5.1 and try to get sample and other IDs recorded on the `@RG` line. Unfortunately, it seems bowtie2 does not write TABs as separators on the `@RG` line and also copies who…
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I am currently using the ngs::ReadIterator to extract sequence data from SRA files. I notice that when I am reading sequence data from an SRA file, there is an extra thread that appears to be part of …
jgans updated
4 years ago
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```
What steps will reproduce the problem?
1.-bash-4.1$ ngs.plot.r -G hg19 -R genebody -C
/srv/gsfs0/projects/cho/riboseq/bam/R10_Rluc_control_arsenite_R1.hg19.bam -O
R10.genebody
.
What is the exp…