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Carried over from https://github.com/monarch-initiative/mondo/issues/753
test case
```
[Term]
id: X:1
xref: X:2 {source="X:3"}
```
produces:
```
"meta" : {
"xrefs" : [ …
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Some brief comments on:
https://github.com/SANBI-SA/combat_tb_model/blob/master/docs/genome_annotation_model.md
Very clearly documented, thank you @thobalose and @pvanheus. The overall strategy make…
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When trying to import the unified phenotype ontology (UPHENO), I run into some errors about `Too many cyclic paths (> 1000).` Is there something different about this ontology? If so, is there a way i…
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The broad problem is as follows
Most modern ontologies will reference classes in other ontologies. Usually they will *reference* a class, but sometimes they will say something *about* a class (e.g …
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Hi, I know this is probably a long shot given the downstream dependencies but as you're probably aware Java 17 has been released for at least a year now and is the latest LTS release (soon to be super…
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Suggestion from the 2020-05-12 GOC meeting:
In addition to the link out to AmiGO, for example, display a window that shows a term definition and placement in hierarchy as part of the autocomplete f…
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The current computed taxon constraints require navigation up the class hierarchy to get the full set of constraints applying to a term. In cases of multiple applicable constraints, some complex reason…
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We rely a lot on ELK, and this kind of axiom, using complex property expressions in class expressions will result in incomplete reasoning:
```
…
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Trying with maxo json/obo/owl throws various errors with the following code (and with phenol)
```
from oaklib.resource import OntologyResource
from oaklib.implementations.pronto.pronto_implementati…
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The README is useful to understand how to set this up, but for an outsider like me it's difficult to tell what the overall objectives are, and how this relates to https://github.com/hapifhir/hapi-fhir…