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I'm trying to install nextflow but when I execute the comand "nextflow run main_AMR++.nf -profile conda" , this happens:
ERROR ~ Error executing process > 'FAST_AMRplusplus:FASTQ_QC_WF:multiqc (Ru…
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### Description of bug
This error occurs with the newest dev version ([8851655](https://github.com/MultiQC/MultiQC/commit/88516550ad52c07b5c9f12543c409fd54151f254) and before), potentially related …
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Hi,
I want to use optitype.
I run:
sudo docker pull fred2/optitype
which works fine, but when run:
sudo docker run -v /path to folder:/data/ -t fred2/optitype -i myfile.fastq -d -o /data/
I g…
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### Description of bug
I ran multiqc for cellranger multi output and get the error
### File that triggers the error
[web_summary.html.zip](https://github.com/MultiQC/MultiQC/files/15349383/web_sum…
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### Description of bug
Hi,
I was previously able to run multiqc with htstream support. However, I have recently upgraded to a new computer (ubuntu 22.04.1) and my new multiqc installation doesn'…
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### Description of bug
I'm trying to process multiple thousands of samples with about 10 modules' result files per sample. To process 2000 of my samples, it took MultiQC nearly 100GB of RAM to comple…
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### Description of bug
MultiQC gives the error message with the `bamdst` module
```
Traceback (most recent call last): …
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### Description of bug
When feeding multiple files to the `crosscheckfingerprints` module the results of the last file overwrites all others
### File that triggers the error
[WES_H113.crossch…
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### Description of bug
I installed multiqc with pip and cloned MultiQC_TestData into a gitpod instance. I ran multiqc version 1.21 on the MultiQC_TestData directory and this did not finish due to err…