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When I try to use the pcv.find_objects command, I get the error "AttributeError: module 'plantcv.plantcv' has no attribute 'find_objects'"
My code: I have had no problem with other pcv functions un…
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**Describe the bug**
I have tried the background removal function, and it doesn't seem to be removing enough of the background. Are there pre-processing steps I should be doing?
**To Reproduce**
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When I run the command to batch process image folder in the Jupyter notebook, there are no output images despite the program completing. Definitely some problem with MPL/Ipython, but I cannot figure …
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Hi!! I am not able to detect the color card using the function detect_color_card in PlantCV 4.2.1 (Ubuntu 20.04). It gives my a strange output. Any suggestions about how to deal with it please? Thanks…
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This query is actually about [PhenoFront](https://github.com/danforthcenter/PhenoFront), which is a 'partner' to PlantCV for those of us using LemnaTec Scanalyser systems.
I am interested in using …
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The following issues have not been updated since being closed:
- https://github.com/danforthcenter/plantcv/issues/1384
- https://github.com/danforthcenter/plantcv/issues/971
OST and the issues…
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**Describe the bug**
I am creating my first pipeline in for PlantCV 4. Images are stored at /home/amdimech/projects/my_experiment/img/exp/. CHMOD is set to -rw-r--r-- for all.
A comprehensive pi…
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I cannot successfully threshold a subset of my images. All images have been taken the same way, but my code fails for about 20% of the images.
I started with
`thresh = pcv.threshold.binary(gray_…
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**Describe the bug**
I implemented the color correction with color card detection as specified in the PlantCV documentation. It seems to work okay with small variations of light, but has trouble with…
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I have been using PlantCV for a while now to analyse LemnaTec Scanalyser visible-spectrum images, but it has come to my attention that the quality of the images generated by PlantCV (using OpenCV func…