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Hi
**CONTEXT**
I am fetching the pdb database using rcsbsearch in order to find out if a certain ligand is covalently bound in a certain pdb of interest.
**CODE**
`from rscbserach import Att…
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```
What steps will reproduce the problem?
1. Running pdb_bfactor with a pdb file that is not deposited in rcsb
2.
3.
What is the expected output? What do you see instead?
What version of the produ…
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Hi there,
thanks for the script! I am using to generate pdb with missense mutations. It works except for this:
`pymissense O95477 abaca1 --maxacid 2224 --pdbpath 7tc0.pdb --tsv /tmp/alpha.tsv`
…
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After finishing #290 , let's look into couplings between GPCRs and arrestins, and add β-arrestin as another protein we couple the odor receptors with and do docking on, then add the dock results of th…
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Should look something like this in the end:
```typescript
export type LigandBindingSite = {
source_object:{
rcsb_id: ..., //
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I have a case where a url in a comment results in a (probably) overfull \hbox, which results in
1. the line to be too long
2. the url to be cropped
In the attached image the line in the pdf …
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Add support for the following trajectory formats:
- [x] TNG format
- [ ] MMTF format http://mmtf.rcsb.org/
- [x] Desmond DTR format
drroe updated
3 years ago
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Is it possible to read in a homology modeled structure that is not in RCSB pdb using the
`-pdb-file-dir`
argument?
Thanks
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```
What steps will reproduce the problem?
1. Running pdb_bfactor with a pdb file that is not deposited in rcsb
2.
3.
What is the expected output? What do you see instead?
What version of the produ…
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Especially the ligands. Thanks!