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Hi,
I have multiple datasets for training. When I build the dataloader, it seems that the multiprocessing doesn't work.
Here is the code:
```python
import torch.multiprocessing as mp
mp.set_start…
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Plotting a single categorical variable works great. This code plots two categorical variables together.
Problems:
- [ ] The legend gets mixed; I would consider adding two legends.
- [ ] The plot …
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Hi,
I'm learning to use napari-spatialdata v0.5.0post1 (https://spatialdata.scverse.org/projects/napari/en/latest/notebooks/spatialdata.html). But I find that the plot theme is different from that i…
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Hi, here I tried to register the DAPI staining images between nanostring and xenium, and apply that transformation to the segmentation masks, the images aligns well in the napari, however, when I extr…
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```python
##
from spatialdata.datasets import blobs
import spatialdata_plot
import matplotlib.pyplot as plt
sdata = blobs()
sdata['blobs_polygons']['column'] = 0
(
sdata.pl.render_imag…
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Routinely listing improvement we can make to the docs:
- [x] add `rasterize_bins()` example in Visium HD notebook;
- [ ] show how to use `get_element_instances()` in the annotation notebook.
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Filtering does not work if an extra table is present not related to an element (which is a use case to save analysis results).
```python
# napari_spatialdata/utils/_utils.py:361
for element_type,…
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Just fixed https://github.com/scverse/spatialdata-plot/pull/334 and noticed that the extent calculation does not account for the radius of points. In the first version of this picture we calculated th…
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I have just noticed that the squidpy notebook can't make the last plot; it should be a quick fix. The latest version of the notebook (gonna be merge in main soon) is this one: https://github.com/scver…
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I would like to generate static images files from NGFF/SpatialData datasets and presets stored in their NGFF Omero metadata, so that one can preview datasets without opening them interactively in Napa…