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Dear All,
Thank you so much for sharing.
I have generate the SNVcatalogue file with all my samples:
Bu…
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```
$ aviary recover -a assembly_checkpointing_megahit_output/megahit/assembly_output/final.contigs.fa --binning-only --skip-binners rosella vamb -c ../data/ERR34*
...
[Thu Oct 31 06:44:25 2024]
l…
wwood updated
3 weeks ago
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_Copied from https://github.com/nextstrain/augur/issues/1566#issuecomment-2356678703_
This seems settled on emitting RFC 4180 CSV-like TSVs.
We should
- [x] Ensure all Nextstrain tool outputs…
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Hi,
We are having problems running your program. We get the message that we have 0 taxa, but we actually have three different phyla in our RED file.
The program run with the example data you h…
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**Literature export gives an empty file**
This issue was originally reported on helpdesk. There should be more than 5000 citations in the TSV but https://api.gbif.org/v1/literature/export?format=TSV&…
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Saving produces an empty zip file:
* start gui
* import all tsv's and sbml model individually from Giordano
* save file
the produced zip file is empty.
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command: streaming_evaluate --task s2st --data-file ../audio-tsv/test.tsv --audio-root-dir ../test_data/audio/ --output ../ --tgt-lang eng --no-scoring
2024-07-11 05:44:48,463 INFO -- seamless_commun…
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My workflow keeps failing at the reference_assembly:map_reads step:
```
ERROR ~ Error executing process > 'pipeline:reference_assembly:map_reads (1)'
Caused by:
Process `pipeline:reference_a…
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https://github.com/fieldtrip/fieldtrip/blob/264f57608bad6f79a3d2bae661da1179817e0729/data2bids.m#L677
Hello,
with the official release of Motion-BIDS a [certain order](https://bids-specification…
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Hi, Laurie
thanks for your great efforts on such a remarkable software on compative genomics. Recently I found that in some HOGs of N0, only 1 gene was found, which makes it not proper to call i…