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I have contacted the inflammation expert on the ARUK-UCL project to comment on the 'gliosis' vs. 'glial cell activation'.
For now, I am pasting a summary of information from the original ticket (h…
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Bug testing (everyone):
Run through the basic user workflow yourself and keep an eye out for software bugs. Note them on Github.
User testing (Toronto in the new year):
- End-to-end walkthr…
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These have been added to the 'single organism namespace' and are generic for both pathogen and hosts.
Do they fall under the 'cell level' or 'cell population level' phenotype or both?
For now, I…
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I love the fact I can use ROBOT to identify unintended equivalent classes. There seems to be one case that is not caught however, which has, in my opinion, a strong use case in the are of definition o…
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@mbaudis @julesjacobsen @cmungall @mellybelly
The Histologic grade of a tumor (the element ``tumor_grade`` of the ``biosample`` of a phenopacket) describes the histologic appearance of a tumor, an…
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modeled on GO:1902935; to use to define phenotypes for PMID:20123972
[Term]
id: GO:new
name: protein localization to mating projection septin ring
namespace: biological_process
def: "A process …
mah11 updated
5 years ago
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currently adding new traits to a list is validated by checking that the relationship type to the parent is 'variable_of'
This does not always work for the Solanaceae phenotype ontology in SGN and fo…
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Modifiers of phenotypes and other fields are defined using human-specific ontologies and descriptors and are not appropriate for other species including mouse or other model organisms. Such additiona…
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Discussing the ability to capture ontology terms as well as evidence codes and supporting literature. It includes Gene Ontology as well as various anatomy and phenotype ontologies (e.g. Uberon, OMP, m…
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I did a bit of digging in GO. There are existing terms that can probably be used to define penetration in abnormal/normal penetration terms
GO:0075052 entry into host via a specialized struct…