-
## Description of bug / unexpected behavior
trying to set up logging in a config file fails
## Expected behavior
logs written to a file
## How to reproduce the issue
Code for reproduci…
-
Do you think it would make sense to add a new parameter set that keeps singletons around? As best as I can tell this would be achieved by changing the `Minimum per-sample read threshold` parameter. Th…
-
In an ideal world, I can train directly on the raw outputs. But for particularly short trajectories (e.g. the allele goes extinct in one or two generations), there's simply nothing to work with. While…
-
### **Microbes as Biosensors**
Maria Eugenia Inda and Timothy K. Lu
_https://doi.org/10.1146/annurev-micro-022620-081059_
this is a super good overview!
**Key parts of engineered sense-co…
-
Hi! Howard mentioned you're working on a nonrepetitive parts calculator for protein coding sequences. How's that going? Would love to use it for some projects. I've found it difficult to use the regul…
-
Remember you have to add a short markdown summary of your results, showing an R figure. The code of the figure should be available (and easy to find too). If you don't have biological conclusions, you…
-
**Lighting Up Biosensors: Now and the Decade To Come** (2019)
Frances S. Lingler and J. Justin Gooding
DOI: 10.1021/acs.analchem.9b00793
Optical biosensors = portable optical devices that use bi…
-
**Submitting author:** @jeffreybarrick (Jeffrey Barrick)
**Repository:** https://github.com/barricklab/ostir
**Version:** v1.0.6
**Editor:** @csoneson
**Reviewer:** @ayush9pandey, @standage
**Archive:…
-
Dear Ben,
Firstly I would like to thank you for all your amazing work. I really appreciate it.
You might be able to help with an issue I have found with my samples. I have 16S amplicons obtained wit…
-
Dear ALL,
I was wandering about the truncLen parameter settings in filterAndTrim that you would suggest for the reads, the QC graphs of which are attached as the PDF files.
I used primers 341F a…