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Hi,
I've adapted the smri_fsreconall.py tutorial to work with my own data but it seems that I've found a bug.
# here is my code:
import os
# import re
import nipype.pipeline.engine as pe
import nip…
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It's probably a bad setup on my part, but I can't seem to make `mne.bem.make_watershed_bem` to work.
I try to explicitly export and source Freesurfer and MNE (C) in the bash and/or via `subprocess` o…
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When running Freesurfer reconall (within a workflow) only volumes in `/recon_all/mri` are created and all other directories `/recon_all/*`are empty.
In contrast, running the command in `/command.txt…
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Dear pycortex team,
I am attempting to import an existing Freesurfer reconstruction, and came across this error:
```
cortex.freesurfer.import_subj("bert")
mri_convert /Applications/freesurfer/subjec…
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MGZ is the compressed version of MGH file... So the model should be MghFile and not MgzFile.
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Ongoing list of superfluous or missing files resulting from `hcp.io.file_mapping.get_s3_keys_meg`
- ~~"noise_subject" and "noise_empty_room" keys are not properly constructed (
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We are getting slow object detection using a 5MP, 2448 x 2048 [Point Grey Blackfly camera.](https://www.ptgrey.com/blackfly-50-mp-color-gige-poe-sony-imx264-2)
Frameserve is fast, about 22 fps I thi…
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Hi,
@romquentin and I have a CTF dataset where the head position coils are already registered in MRI space. I think in this case we don't need to do the head shape coregistration.
Is there an ea…
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Hi there,
I'm a new user of nipype. My research group is currently using the software to create a neuroimaging pipeline which we plan on using to track the progression of Alzheimer's Disease. I'm try…
smrym updated
8 years ago
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As identified in https://github.com/mne-tools/mne-python/issues/3281,
`nibabel.freesurfer.io.write_geometry` doesn't seem to write in the correct coordinate system.
Weirdly, this is visible in fre…