-
I have used scipy.curve_fit before and was able to fit my data to the following non_linear function. I don't remember the older version number.
However, now I am trying to fit the curve on the same …
-
XHMM does the coverage normalization per target rather than sample.
So we need to provide the option to do produced counts normalized per target, PTCOV?
-
Does the difference in precision (of the pcov values) explain any of the reduction in QC for GATK CNV (over ReCapSeg)?
GATK CNV: `2.649e-06`
-
without parameters:
...
Model Parameters: [ 0.08827059 0.03064064]
...
vs.
with parameters:
...
Model Parameters: {'beta': 0.08827059, 'gamma': 0.03064064}
...
The problem is in class `basemodel.p…
ckaus updated
8 years ago
-
This is pretty bad.
If I do
```
xpobssim.py -c ximpol/srcmodel/config/test_single_point_source.py -d xxx
```
with a duration larger than ~2300 s, bin the data in MCUBE mode and run the quick analys…
-
Format is TBD, but should be a simple text file. It can be the same as the CBS input.
In order to close this issue, we must also have a way of generating the target weight file from a PoN file.
-
Which SciPy version do you use? maybe this version? https://scipy.github.io/devdocs/generated/scipy.optimize.least_squares.html
@yenarhee @mitalbert
```
>>> import scipy
>>> scipy.__version__
'0.14…
ckaus updated
8 years ago
-
Just wanted to double check. I'm not totally clear on how `scipy.optimize.curve_fit` works, but it seems like this function is actually fitting Ki and not IC50?
def fit_ic50(inhibitor_concentration…
-
See the broadinstitute/recapseg repository for a list of evaluations. We can also run a very similar workflow to the CRSP evaluation
-
Line 32 here:
https://github.com/choderalab/dispensing-errors-manuscript/blob/master/notebooks/echo-vs-tips.ipynb