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The UI that allow to build pedigree should accept pedigrees that have one missing person.
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Dear SHAPEIT5 team,
for the genotype imputation (common variants) of a small sample of 133 mother-offspring duos (total n=266) from SNP array data, I am wondering if it is better to perform phasing…
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Expected Behavior
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use branch topic/d3_upgrade
For Bugs:
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### Environment
#### Steps to Reproduce…
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**Describe the bug**
An AnVIL user encountered the error below when trying to put in a data loading request for a subset of samples.
He noted, "I deleted the project and uploaded again the VCF fil…
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**Describe the bug**
Sometimes between 4bf28a56362acaa182cae6b627e616280c0e15ea and v1.6.1, charts added as blocks on pages became colorless.
Issue did not happen in previous version or when #59 was…
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Cloned [https://github.com/nasa/nos3.git](https://github.com/nasa/nos3.git) "dev" branch onto a Ubuntu 22.04 system.
When "make prep" was executed, to install Cosmos, received errors when Firefox w…
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In #505 I commented that `definitions` fits better into core than validation (and @Anthropic agreed).
The point of `definitions` is simply to reserve a keyword under which you can safely collect na…
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https://batch.hail.populationgenomics.org.au/batches/437477/jobs/1
https://github.com/populationgenomics/production-pipelines/blob/1390a68b31c1bcc4474ab57b6914eb7c75b36db6/cpg_workflows/stages/gcnv…
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I find the pedigree documentation to be extremely helpful, but `nx` and `plt` can be confusing here, as they are not imported inside the documentation page https://github.com/tskit-dev/msprime/blob/ma…
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Turning off the numba cache seems to cause our CI builds to fail when running tests in NOJIT mode (which we use to get coverage of jitted functions). Seems quite tricky to work around as discussed her…