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Please supply the following information:
Short title: The `benchdamic` package: benchmarking of differential abundance methods on microbiome data
Workshop URL: https://mcalgaro93.github.io/benchda…
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https://bioconductor.org/packages/release/bioc/html/SPOTlight.html
* Likely drop rare snRNA-seq cell types
* Can start exploring how to run it by using the Tran et al, Neuron, 2021 data
* Create …
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https://mp.weixin.qq.com/s/RwZBIhjnBVry4BWZL8x1Zg
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We will need the test suite to automatically generate a number of plots:
- A bar chart with the total number and the fraction of libraries for which an adapter was and was not identified
- A histo…
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Hi,
I can't figure out what I'm doing wrong in setting up zUMIs. This is what my YAML looks like:
```
project: bulk_smartseq_umis
sequence_files:
file1:
name: /path/to/bulk_RNA/bcl2fas…
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https://mp.weixin.qq.com/s/TOqdSsEuJ6r-oKarZjcIiw
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Hi,
Is there a way to use pcaExplorer with the DimReduc object from Seurat (i.e. convert this into a suitable format)? Or would I need to run `prcomp`?
Best wishes,
Lucy
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Hello,
Is it possible to use this package using as input data from bulk rna seq instead of scRNA-seq ?
Thank you for your help.
Imran Lahmar.
Ph.D student.
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Hi,
I couldn't figure out which part of the code given here refers to Fig 1c in the final paper (i.e. MAESTER variant recovery plot with blue bars). The paper doesn't make it clear what the definit…
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https://mp.weixin.qq.com/s/-AzxUP3PrstSfbRa28rgnQ