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I do not know how to post a issue, so I paste the code here. Hope you can help me.
` >isolator analyze -o xxx.hdf5 -g mm10.fa -p 4 RefSeq_Genes_mm10.gtf xxx.bam`
the bam file above is the output …
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I encountered this today, and I'm completely baffled by it.
I have an object `test_gr` that looks like this:
```
+--------------+-----------+-----------+----------------------+-------+
| Ch…
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Dear Team,
I run Whippet on my paired-end, unstranded, polyA+ RNA-seq dataset. The dataset is of 75bp length (all reads in all samples have this length) and performed in triplicates per condition (…
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Hi, I am analyzing a dataset with several samples that I plan to use for downstream analysis of both gene level and transcript level analyses. I noticed an issue with the gene count matrix generated…
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Hi
I'm having the same error of the author of [this post](https://support.bioconductor.org/p/89407/), but my GTF file is not corrupted or whatever, and it has the same number of exonic regions as the…
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I tried to run snippy with the following genbank file:
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/008/632/635/GCF_008632635.1_ASM863263v1/GCF_008632635.1_ASM863263v1_genomic.gbff.gz
However, the p…
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Hello,
Thank you for your great work! When I ran a program (within group analysis) I got an error message regarding the codon multiplet issue as below.
## WARNING: The CDS coordinates for gene gen…
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Would this process be able to detect partial tandem duplications in KMT2A if I add to the database? For example, the breakpoint might be between somewhere on ex9 and somewhere on ex3 (you basically h…
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How does this package deal with multi-mapped reads?
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Hi, I am parsing many of genbank files. I have to trim sequence by coordinates (START,END). If situation look like:
3447..3578 or
complement(3102..3323) or
join(3447..3578,3447..3578) or
com…