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The Louvain clustering algorithm is a well-established algorithm for finding communities in a graph network. It is a central part of the algorithm used by the RNASeq scientists for discovering cell ty…
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**Describe the bug**
K8s: 1.21
When deploying via Helm and trying to place pods to user selected nodes by editing the `values.yaml` file, the `.nodeSelector:` term is ignored or causes no pods t…
BnJam updated
2 years ago
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I have two pipelines running one after the other, it runs happily through with ParallelRunner specified. When I try and run the second pipeline, it crashes with parallel runner but not when run sequen…
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People use Xarray with deep learning frameworks like TensorFlow and PyTorch. There is some frustration in moving data from the way it was stored for archive to how the scientist and deep learning fra…
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Instead of using the EIA API to pull monthly average fuel costs by state and fuel when individual fuel deliveries have their costs redacted in the `fuel_receipts_costs_eia923` table, calculate it for …
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Move the VCN extract_frame_times_from_photodiode() implementation and dependencies into ecephys_etl_pipelines repository.
Tasks:
- [ ] Understand the extract_frame_times_from_photodiode() function a…
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It's a request mentioned in today's community meeting.
After a pipeline run got done, we can provide a notification to trigger other tasks/systems.
Without this feature, it's still can be handled …
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https://bhavaniravi.com/blog/apache-airflow-introduction/
https://airflow.apache.org/
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Once #294 is done and we are storing ROIs directly in the HDF5 output file, we should re-run our 18 example experiments (or the data cube delivered by the science team, if that is available at this ti…
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Where does https://github.com/opentargets/data_pipeline/blob/master/mrtarget/resources/genes_with_non_reference_ensembl_ids.tsv come from, and what is its significance?