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Hi,
Thank you for developing SAVERX. I am trying to impute multiple-sample single-cell UMI data using SAVERX. In order to make the gene expression comparable across samples, I have already normaliz…
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![p2](https://github.com/user-attachments/assets/68ad1dc6-3b8e-4849-81f5-9f933d5cbf25)
Without any changes
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Hi, I am running PreProcess and then Germline in a process in nextflow. But for some reason, the job never finish even though all the output files are written to the output directory. I get beagle fin…
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load_path variable is not defined in "impute.py" script, so it prevents us from running the script
It would be great if you can fix this OR explain what is the proper "load_path"?
Besides, "im…
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Similarly to the currently allowed
```
SELECT *
FROM data
```
as sugar for
```
SELECT data.col1, data.col2,...
FROM data
```
We can add
```
SELECT PROBABILITY OF * AS Pr_Data UNDER mo…
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Large ML projects spanning teams reuse pipelines and models (ex: ensembles, feature engineering, etc).
There are two aspects of reuse:
1. Reuse a whole Flow, to be able to compose a Flow of othe…
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Great package, I find it very useful for imputation and a lot better than many alternative methods. What do you think about changing the random forest engine from "randomForest" to one of the newer pa…
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Hello,
I have been using your program to do imputation for some scATAC-seq data. I have a query regarding the output. The output for the both --binary and --impute function alter the peak annotation …
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I am using a publicly available dataset (National Health Interview Survey). I am studying heart disease as the outcome variable and examining the impact of several clinicodemographic factors on preval…
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@randrescastaneda @tonyfujs I've made some progress implementing the charts we discussed by email and got as far as I could. There is [python code in the repository](https://github.com/worldbank/ESG_g…