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We may want to look at something like json-schema in order to make clearer the shape of data required by olmsted, en route to making it a more general purpose tool:
http://json-schema.org/learn/get…
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Hello,
I am running OrthoFinder in HPC. I have received these error messages. Not sure what went wrong.
_Traceback (most recent call last):
File "orthofinder/orthofinder.py", line 1549, in
…
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Let's add some additional datasets for testing the phylogentic beta diversity analysis. These should include sample input files and test output files that the computations should produce.
Note: Th…
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I think the description of the output format could do with some improvement. From Figure 1 of the preprint, it looks like for `n` sample haplotypes, the compact tree representation should contain a pl…
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Hi, i'm starting to use PCOC for convergent analysis in a small clade of nematodes, 16 species, so i feed the software with the fasta alignment and my tree that was previously build with *Beast in new…
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### Summary
- What does this package do? (explain in 50 words or less):
Parsing and exporting phylogenetic trees with associated data.
- Paste the full DESCRIPTION file inside a code bloc…
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Hello,
I'm using `tol_induced_subtree` to create a tree from a list of ott IDs. I successfully removed the ott IDS from the tips when plotting with `plot(my_tree` and `label_format = "name"` but this…
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i have finished my task,but i can't understand the node labers of the Species tree,
. Is it worth going with NexSON? Aside from voca…
rvosa updated
5 years ago