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https://github.com/brainlife/validator-neuro-rois/blob/298168d6edda6a2b73edb52f20056efc1553a38c/validate.py#L51
If I'm interpreting this line correctly, it seems that ROIs can only be validated if …
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In https://github.com/ivadomed/data-testing/pull/2, testing-data are being created to run a series of test for ivadomed.
However, many of the labels are not reflecting the anatomical content of the…
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the ants2oro function needs to have a dtype option passed to neurobase::writenii. Since changes to neurobase::writenii to fix previous NA bug fix the behavior of dtype for any other package functions …
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I'm going through a large sample of MRI images, and each time I try to save a file, a huge window opens that stretches far past my screen. I think it's growing, because if I try to move the window wit…
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I can create vectors with MRtrix
```
dwi2tensor -mask mask.nii -fslgrad dwi.bvec dwi.bval dwi.nii dti.nii
tensor2metric -vector dti_v1.nii dti.nii
```
and FSL
```
dtifit --data=dwi.nii --…
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Hi Dr. Muller,
I tried the kits19 notebook and it runs pretty well. But because of my (relatively) weak GPU I had to choose only several samples trained on limited epochs. Which means the results w…
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According to the documentation, you should have 110 rois for this parcellation. However the actual dataset has an extra variable, I suspect variable 83 which does not seem to correspond to any legitim…
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I'm trying to create a new atlas based on the subcortical 3D volume from ENIGMA toolbox (sctx_lh.gii and sctx_rh.gii).
However, I was not able to do that. I would like to have the same functionality …
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here is the code
> have.fsl()
[1] TRUE
> getOption("fsl.path")
[1] "C:/Users/Asus/FSL/FSLVm7_64.vmwarevm"
> #options(fsl.path = "C:/Users/Asus/FSL/FSLVm7_64.vmwarevm")
> setwd("/Users/Asus/Deskt…