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http://www.patric.local/view/FeatureList/?and(in(genome_id,(562.5742,1151243.3,1446497.3,1335303.3,1335304.3,1048265.3,1048266.3,1240768.3,1240769.3,1240770.3,1240771.3,1240772.3,1240773.3,1240774.3,1…
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I'm looking at Lactobacillus brevis ATCC 367. When I look at the genome landing page, it says that it has 2271 PLFams:
But when I'm using the PFS and insist that each protein family contain Lact…
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Brucella PF tab, applied keyword filters to see membrane proteins. Filtered families are shown
correctly in table and heatmap.
Then, I reset the filters, to show all families. They are correctly di…
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I received a reply from Interpro with a hierarchy of domains. We can use this to reduce the number of domains we show. It does not cover all domains but we can reduce some of it. It would be good to k…
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Hi Guys,
This is not really an issue but...
I've created two KBs for Reach from the Bioentities files: a protein complexes KB and a protein families KB. I'm currently in the process of updating ou…
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name: SHP box
child of SO:0100017
conserved Cdc48-interaction motif. The consensus sequence is F.GK..[RK]LG.
PMID: 27655872
PMID: 17083136
note to self
rbd2 PMID:27655872
+ dysferlin and …
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In https://github.com/dhimmel/biorxiv-licenses/issues/1, we've been discussing the formatting/encoding of [`biorxiv/biorxiv.txt`](https://github.com/OmnesRes/prepub/blob/a1c8b1230a012f6d8d4025761f01f9…
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So I choose Brucella
Hit Submit and I could see Brucella in the background:
Then I could see that it says Escherichia in the background (I had loaded Escherichia earlier this morning):
When it fin…
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I waited for about 5 minutes, and it never loaded
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1. we should use a third kind of shape to denote PTM enzymes. I propose to use ellipse which is similar to circle used in as the central protein.