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We should consider whether it would be fruitful to allow `packrat` to manage only a subset of dependencies. Instead of inferring the set of dependencies from the project context, we might allow the us…
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Thank you for providing this set of repositories and the normalization testing package. I am interested in comparing the Network Centrality Scaling approach to TMM, and have been able to load the lymp…
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When using a new Seurat V5 object `RunNMF` can return the error `no slot of name "data" for this object of class "Assay5"`.
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install failed, see the details below:
```
Bioconductor version 3.16 (BiocManager 1.30.19), R 4.2.2 (2022-10-31)
Installing package(s) 'JASPAR2022'
installing the source package ‘JASPAR2022’
tr…
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Hi,
I tried SBGN View with a minimal custom SBGN, to see if I can manage to visualize omics data of both transcriptome and metabolome via SBGN_View. I noticed that if compound nodes are split, the …
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devtools::install_github("junjunlab/GseaVis")
Error in get(x, envir = ns, inherits = FALSE) :
object 'gson_cpd' not found
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Hello,
First, thanks a lot for this wonderful package!
I am getting an error when generating an HTML report passing a ggplot2 theme to the `DESeq2Report` function. The source code (`regionReport/…
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Hi,
The vignette mentions the version 0.4 but I'm only able to install the 0.3 version.
How can I install the latest development version? Thanks
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Dear Sir/Madam,
I am very interested in applying your flowCore R package in my research. In my current study, I have generated multiple .fcs files with a flow cytometry instrument. Is it possible to …
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Codecov made upgrades a while ago that obviated the need for `codecov.yml` files (or codecov tokens) in your GitHub repo.
So unless there's some other functional use for this file, we should remove…