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I did these as instructed on README.
```
git clone git://github.com/CampagneLaboratory/goby.git
cd goby
git checkout stable
ant -f build.xml jar
```
So far no error reported.
```
$ ./goby
Trying to…
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Added new option --ambig_bam --multiple for Bowtie2-mode only, which writes out a single all the alignments for sequences with multiple alignments to a special file ending in .ambiguous.bam.
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Hi.
When I try and merge some bisulfite novoalign bams I get a core dump. I've tried this on Centos5 and Centos 6 with the 2 versions above and I consistently get this error soon after the run begin…
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Downloaded bowtie2 2.2.6 from sourceforge.
Downloaded hs36DH from NCBI using bwakit.
```
grep '^>' hs38DH.fa | wc -l
3366
```
Tried bismark_genome_preparation:
```
$HOME/avilella/Bismark/bismark_g…
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Suggestions and ideas for topics we'd like to see covered at some point. This thread is for bioinformatics-related topics, or things that people working with genetic data might find useful. Posting a …
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Hi,
I need the above compound for the updated IUBMB reaction EC 4.4.1.24
(2R)-3-sulfolactate = pyruvate + bisulfite
pmimd:20007648
/Kristian
Reported by: axelsen
-
```
running for days on bis
```
Original issue reported on code.google.com by `zack...@gmail.com` on 25 Jul 2012 at 6:13
- Blocking: #284
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We need to get these samples out for sequencing this month.
I am leaning towards MBD-BS-seq / MeDIP-BS-seq but could be convinced otherwise.
Here is what we have
![DNA](https://www.evernote.com/l/…
sr320 updated
8 years ago
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Could you explain this?
sr320 updated
9 years ago
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Hi,
I used intersectBed to check the number of reads overlapping a particular site. The no. of matched reads in the .mr.sorted file generate by duplicate-remover (used as input for methcounts) and th…