-
Hi,
I am working with Jan (@JJEldridge) on getting the CMC-COSMIC code running. I was originally receiving the same error as Jan, (https://github.com/COSMIC-PopSynth/COSMIC/issues/552) but managed …
-
While trying to pull a docker with Cromwell 58, I get the following error:
`"message": "Task xxx.xxx:0:1 failed. The job was stopped before the command finished. PAPI error code 2. Execution failed…
-
Hi developers,
To preface my issue, I am by no means a command line pro, and I only use the command line for bioinformatics tools as necessary for my research. My university has a HPC cluster that …
-
Dear
I am a HPC sysadmin, and together with a QUILT user, we are observing a strange multi-core behavior of the software on a cluster with 128-core AMD nodes.
There, QUILT is installed and launch…
-
Hi.
bowtie2 use high sys %Cpu.
Doses bowtie2 use system call that will use a lot of cpu?
```
#top
Tasks: 1537 total, 5 running, 1532 sleeping, 0 stopped, 0 zombie
%Cpu(s): 75.7 us, 22.…
-
### What happened?
Under load blocks of Zarr objects go missing. This happens on our minio server (see example) and on the hpc file system. This happens under load, when the filesystem gets slow, s…
-
- [x] update instructions for students on how to start notebook in vscode
- [x] switch data download to s3 bucket
- [x] conda/mamba
- [x] pytorch version
- [x] update U-Net figure
- [x] Bonus exe…
-
I want to use my newly assembled bacterial genomes with some reference genomes to generate a phylogeny tree. I found your tool very interesting.
I am using a singularity container to run GToTree i…
-
Hi,
I've tried to download the latest singularity image from your archive https://data.broadinstitute.org/Trinity/TRINITY_SINGULARITY/ with wget:
```
wget https://data.broadinstitute.org/Trinity…
-
We meet some random errors when using pytorch's default NCCL with 2.7.8 version, in the DGX A100 cluster.
So we try to upgrade it. We tried versions 2.8.4, 2.9.8 and 2.9.9.
However, We find the ove…