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I would like to know what is the exact dataset used to generate the toy_ppi dataset in example_data folder (input files used to generate the pre-processed dataset). What are the node features availabl…
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**Is your feature request related to an existing issue or bug?**
no
**Is your new feature related to a general problem?**
Typically annotation of large secretion systems (T3SS, T4SS, T6SS, etc) c…
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When annotation extensions are comma delimited and are from GO_CC, CL and an anatomy ontology then the model should indicate GO_CCpart_ofCLpart_ofanatomy.
MGI | MGI:1336882 | acts_upstream_of_or_…
ukemi updated
4 years ago
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I've been able to get the files expected in step 3.2 with the basic usage instructions. Nonetheless, while implementing system minimization, I discovered the issue depicted in the enclosed image.
I…
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@zhang-ivy @apayne97 @jiayeguo @egoldber @hannahbrucemacdonald @jchodera
We're going to work out here who's doing what and how they'll organize it.
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Hello,
Looks like this one is not yet resolved but I cannot find any open ticket. See for example:
http://amigo.geneontology.org/amigo/gene_product/UniProtKB:T1ESS4
This gene has IBA annota…
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Is this accurate? I kept looping through records to try understand the API behavior and data structure/types.
This information might be helpful for those consuming the API.
## Header Paginatio…
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Hi
Sorry for the rather naive question. But could you point me to any tutorials on how to setup, for example a KEGG protein family database, to use with shotmap?
After having done quite an amoun…
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Nice work and beautiful codes! But some question about file path.
What is the file ```alphafold_enzymes.p``` and ```uniprot2sequence_standard_set_structs.p``` in ```clipzyme/datasets/enzyme_screening…
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KEGG is now available as a rest API:
https://www.biocatalogue.org/announcements/37
This would be much simpler to use, but I could not find a parseable description, so it is unclear if we can auto-gen…