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When importing an annotated VCF file, variants that have multiple annotations (multiple transripts for instance) are merged in one line (one line per genomic position).
Annotations are merged and s…
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I have a splicing paper and I don't know which GO term to use.
PMID:36095128
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Title | Splicing of branchpoint-distant exons is promoted by Cactin, Tls1 and the ubiquitin-fold-activated Sde2.
A…
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Author Name: **Bert Klauninger** (Bert Klauninger)
Original Redmine Issue: 2476, https://redmine.open-bio.org/issues/2476
Original Date: 2008-03-26
Original Assignee: Bioperl Guts
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For some …
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According to the sequence ontology, frameshift variants are coding sequence variants:
http://sequenceontology.org/browser/current_svn/term/SO:0001818
However, VEP does not annotate them as coding …
Hoeze updated
7 months ago
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I have repeated query openchat:latest, but return differed results.
The query even returned an answer with no, running 1s.
can you please tell me why and how i can prevent this
tribble(
~rol…
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#### Are you using the latest version of [samtools](https://github.com/samtools/samtools/releases/latest) and [HTSlib](https://github.com/samtools/htslib/releases/latest)? If not, please specify.
```…
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I have a question for the Lilac software team:
I am not entirely sure, but could the issue I am experiencing be due to the relatively few variations in the MHC region of the downloaded GermlineHetP…
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Hi,
it would be great if this package could be compatible with Guix, as this can help to make the work more reproducible.. are you planning this? because we use Guix, it would take too much effort t…
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Hi
I got the following error while running ascat.prepareHTS :
> ascat.prepareHTS( tumourseqfile = "Tumour.bam", normalseqfile = "Normal.bam", tumourname = "Tumour_name",
normalname = "Norm…
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In Stingray, we build documentation from a bunch of rst files and a number of notebooks. It usually works quite well, but today I'm having errors like the ones in the build below:
https://github.co…